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What the Bumps Actually Are

Most likely they're adventitious roots, also called root initials or root primordia. A tomato stem can turn almost any part of itself into roots, and those little bumps are the start of that. The University of Maryland Extension says small knobs and swellings like these are usually harmless and no action is needed. Rural Sprout goes further and says it's more unusual to find a tomato with none at all.

One of the posts I read says normal tomatoes only grow roots in the soil, and that stem roots mean the main roots are failing. That isn't right. Stem roots are normal tomato behaviour. They're also why gardeners bury the stem deep when they plant, because any part of the stem under the soil turns into roots.

Why They Show Up

Tomato Dirt lists high humidity, overly wet weather, over-watering, poor drainage and root injury among the usual triggers. Some varieties do it more than others, and heirlooms are the ones most prone to it.

Waterlogged soil is a real cause. When roots sit in wet, compacted soil they struggle for air and can rot, and the plant puts out stem roots to replace them. The fix is the usual one: water less often, loosen compacted soil, and mound fresh soil up around the stem.

Another grower posted a checklist of four causes and fixes for white roots on a tomato stem:

  1. Too much water or compacted soil. The roots can't breathe and start to rot. Water less, loosen the soil, then mound soil up around the stem.
  2. Too much fertiliser. Feeding too strong or too often can burn the roots. Flush with clear water and let the plant recover in a cool spot.
  3. Cold. Root activity drops, especially in early spring and in autumn and winter. Cover the plant with film or bring it indoors.
  4. Bacterial disease. The roots or the base of the stem are infected, the roots rot, and the plant grows new roots up the stem to survive. The stem often turns black and oozes gum. Cut off the diseased parts, ventilate, and pull out badly affected plants so they don't spread it.

Number 1 and number 4 match what I found in extension sources. I couldn't find sources that tie cold or fertiliser burn to stem roots, so treat those two as possibilities and don't count on them.

The Wilting Is the Detail Worth Checking

Bumps on their own are usually fine. A plant that wilts in the afternoon and recovers in the evening deserves a second look, because that can be heat or thirst, and it can also be an early sign of bacterial wilt. USDA APHIS describes infected tomato plants that appear to recover when nights cool down, and Clemson's fact sheet notes that when the disease develops slowly, numerous adventitious roots often form on the lower stems.

There's an easy test. Cut a piece of stem near the base, rinse it, and hang it in a glass of clear water. If the plant has bacterial wilt, a milky stream flows from the cut end into the water within 3 to 5 minutes. If the water stays clear, bacterial wilt is unlikely.

If the test is positive, remove the plant straight away. Clemson says there are no effective chemical controls, and the bacteria spread through soil and water to nearby plants.

When the Bumps Are Something Else

White, bristly bumps are roots. Dark, sunken spots or lesions on the stem are a different problem, and so are bumps that ooze or a stem that turns black. Tomato Dirt separates these from root initials and points to stem cankers, edema and galls as the other likely causes.

What to Do About It

If the plant looks healthy apart from the bumps, leave them. Mound soil over the lowest ones and they may grow into proper roots. Water deeply but not too often, keep the soil loose so it drains, and give the plant enough space for air to move around the stem.

If the wilting continues, run the water test before you decide anything.

Once the fruit starts to ripen, how to pick ripe fruit covers what to look for, and if you fancy something different next season, there's purple tomatoes too.